--- title: Tools | Genophore description: Explore Genophore's advanced tools for protein design, molecular visualization, and sequence alignment. Leverage AI/ML integration for structure prediction and drug discovery. --- [Skip to content](https://info.genophore.com/tools#main-content) [![Genophore](https://info.genophore.com/hubfs/Imported%20sitepage%20images/203149784d2ad8223028.svg "Genophore")](https://www.genophore.com) - Products - [Molecular Biology Suite](https://genophore.com/products/molecular_biology_suite/) - [Protein Sciences and Antibody Discovery](https://genophore.com/products/protein_sciences_and_antibody_discovery/) - [Structural Enablement](https://genophore.com/products/structural_enablement/) - [Connecting Biological and Chemical Knowledge](https://genophore.com/products/connecting_biological_and_chemical_knowledge/) - [Electronic Lab Notebook](https://genophore.com/products/electronic_lab_notebook/) - Technologies - [Data and Sequence Visualization](https://genophore.com/technologies/data_and_sequence_visualization/) - [Protein and DNA Parts Builder](https://genophore.com/technologies/protein_and_dna_parts_builder/) - [Workflows Builder](https://genophore.com/technologies/workflows_builder/) - [Customizable Data Structures](https://genophore.com/technologies/customizable_data_structures/) - Solutions - [Biopharmaceuticals & Biotech R&D](https://genophore.com/technologies/biotech_research_and_development/) - [Life Sciences](https://genophore.com/technologies/life_sciences/) - [Pricing](https://genophore.com/pricing/) - [Tools](https://info.genophore.com/tools) - [Blog](https://info.genophore.com/blog) - [Contact Us](https://genophore.com/contact/) - [Try Now](https://www.genophore.com/app) # Protein Design and Engineering Tools and Services ![Screenshot 2024-06-08 at 9.58.20 PM](https://info.genophore.com/hubfs/Screenshot%202024-06-08%20at%209.58.20%20PM.png) Molecular Visualization ## **MolX** 3D Molecular Viewer MolX is more than just a molecular viewer. While it incorporates familiar functionalities from popular desktop applications, MolX transcends single application and desktop limitations by offering a cloud-based platform. This ensures seamless connectivity to the cloud, unlocking endless possibilities for integration. [Read More](https://info.genophore.com/tools/molx-tool?hsLang=en) [Try Now](https://genophore.com/app/protein_structures/standalone_molx/) ![Molecular feature localization](https://info.genophore.com/hs-fs/hubfs/Molecular%20feature%20localization.gif?width=1280&height=720&name=Molecular%20feature%20localization.gif) Sequence Manipulation ## Protein Editor and Sequence Visualization Genophore Protein Sequence Viewer and Editor – your all-in-one solution for visualizing, analyzing, and editing protein sequences. Our intuitive interface, advanced visualization options, and powerful annotation tools make it easy for researchers and scientists to explore and modify protein sequences with precision. Whether you are studying functional motifs, editing sequences, or analyzing structural properties, Genophore provides a seamless and user-friendly experience to support protein engineering needs. [Read More](https://info.genophore.com/tools/molx-tool?hsLang=en) [Try Now](https://genophore.com/app/protein_structures/standalone_molx/) DNA Sequence Design and Alignment Tools ## Genophore's Powerful Tools for Protein Design ![Molecular feature localization](https://info.genophore.com/hs-fs/hubfs/Molecular%20feature%20localization.gif?width=1280&height=720&name=Molecular%20feature%20localization.gif) Sequence Manipulation ### Protein Editor and Sequence Visualization Genophore Protein Sequence Viewer and Editor – your all-in-one solution for visualizing, analyzing, and editing protein sequences. Our intuitive interface, advanced visualization options, and powerful annotation tools make it easy for researchers and scientists to explore and modify protein sequences with precision. Whether you are studying functional motifs, editing sequences, or analyzing structural properties, Genophore provides a seamless and user-friendly experience to support protein engineering needs. ![Sequence Editor and Codon optimization](https://info.genophore.com/hs-fs/hubfs/Codon%20optimization.png?width=1280&height=720&name=Codon%20optimization.png) Protein Expression ### Fine-tuned Codon Optimization Genophore's DNA sequence editor and codon optimization tool make it easy to automate sequence engineering tasks including bulk operations. Have a full control of your gene expression by optimizing codon usage for various host organisms. This tool us designed for researchers and biotechnologists and offers comprehensive features for efficient and fine-tuned sequence optimization. [Try Now](https://genophore.com/app/codon_optimization/) [Read More](https://info.genophore.com/tools/codon-optimization?hsLang=en) ![Screenshot 2024-06-26 at 3-12-50 PM-1](https://info.genophore.com/hs-fs/hubfs/Screenshot%202024-06-26%20at%203-12-50%20PM-1.png?width=1180&height=589&name=Screenshot%202024-06-26%20at%203-12-50%20PM-1.png) Sequence Comparison ### Multiple Sequence Alignment Introducing our powerful cloud-based [protein and DNA sequence alignment tools](https://genophore.com/app/alignments/multi_sequences/), a powerful component of the Genophore platform. Designed for efficient and streamlined workflows, this Genophore automatically aligns protein orthologs and family members, as well as Sanger sequences to support your molecular biology and target design workflows. With over 2 billion sequence relationships, scientists can seamless find orthologs and fuel their design journey. [Try Now](https://genophore.com/app/alignments/multi_sequences/) AI/ML-Powered Workflows # Stay Tuned for More New Tools and Integrations Genophore is integrating advanced AI and ML [tools](https://genophore.com/app/computational_ai_tools/) for protein structure prediction, generative protein design, virtual screening and molecular docking. These tools are designed to work seamlessly together, while also embedded in the informatics discovery workflows.  [Login to Genophore Now](https://genophore.com/app/) ![](https://info.genophore.com/hs-fs/hubfs/1A2L-1A2M%20(2).png?quality=high&width=200&height=200&name=1A2L-1A2M%20(2).png) ### 3D Structural Alignment Use a plethora of [3D structural alignment tools](https://genophore.com/app/protein_structures/protein_structures_alignment/protein_structure_alignment_tool/) for a comprehensive and insightful evaluation of your experimental and predicted structures. Algorithms including DeepAlign, FATCAT, Tm-Score, MM-Align and US-Align. ![](https://info.genophore.com/hs-fs/hubfs/4ZGM-1.png?width=200&height=200&name=4ZGM-1.png) ### Biomolecule Structure Prediction Genophore incorporates the most recent ML/AI-based models for protein and antibody structure prediction into our protein design workflows. This includes the structural predictions of proteins and nucleic acids complexes structures.  Current [models](https://genophore.com/app/computational_ai_tools/) in development include [ESMfold](https://genophore.com/app/protein_structures/protein_structures_prediction/protein_structure_prediction_tool/esm_fold/), [RoseTTAFold All-Atom](https://genophore.com/app/protein_structures/protein_structures_prediction/protein_structure_prediction_tool/rosetta_fold_all_atom/), [AlphaFold2/OpenFold,](https://genophore.com/app/protein_structures/protein_structures_prediction/protein_structure_prediction_tool/open_fold/) AfCycDesign, AFcluster among others.   ![](https://info.genophore.com/hs-fs/hubfs/Ligand%20docking.png?width=200&height=200&name=Ligand%20docking.png) ### Druggability Assessment and AL/ML Ligand Docking Genophore offers advanced docking tools that provide precise and efficient prediction of molecular interactions. These tools enable researchers to identify binding pockets, explore docking poses and visualize results with lightening speed. Try [DiffDock-L](https://genophore.com/app/protein_structures/molecular_docking/diffdock_l/), which allows docking of ligands into PDB structures. Docking results can be visualized using MolX, our easy-to-use 3D molecular visualization platform. ##### Genophore - [Contact Us](https://genophore.com/contact/) - contact@genophore.com 8 The Green Dover DE 19901 United States [Follow us on LinkedIn](https://www.linkedin.com/company/genophore-inc/) [Follow us on Twitter](https://twitter.com/Genophore_Inc/) ##### Products - [Molecular Biology Suite](https://genophore.com/products/molecular_biology_suite/) - [Protein Sciences and Antibody Discovery](https://genophore.com/products/protein_sciences_and_antibody_discovery/) - [Structural Enablement](https://genophore.com/products/structural_enablement/) - [Connecting Biological and Chemical Knowledge](https://genophore.com/products/connecting_biological_and_chemical_knowledge/) - [Electronic Lab Notebook](https://genophore.com/products/electronic_lab_notebook/) ##### Technologies - [Data and Sequence Visualization](https://genophore.com/technologies/data_and_sequence_visualization/) - [Protein and DNA Parts Builder](https://genophore.com/technologies/protein_and_dna_parts_builder/) - [Workflows Builder](https://genophore.com/technologies/workflows_builder/) - [Customizable Data Structures](https://genophore.com/technologies/customizable_data_structures/) ##### Solutions - [Biopharmacuticals and Biotech R&D](https://genophore.com/technologies/biotech_research_and_development/) - [Life Sciences](https://genophore.com/technologies/life_sciences/) --- ©2024 Genophore - [Terms of Use](https://genophore.com/terms/) - [Privacy Policy](https://genophore.com/privacy/)