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Learning, the Genophore Blog
Your hub for the latest computational biology and bioinformatics resources, updates, and expert insights. A simplified journey to computational and generative biology starts here.
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Drug Discovery
ML/AI
Protein Design
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Recent Articles
DFMDock: A Unified Approach for Protein Docking?
September 30, 2024
Docking
Bioinformatics
Evaluating Drug-Likeness: Current Methods in Predicting Small Molecule Drugs
September 26, 2024
Chemistry
ML/AI
Drug Discovery
Bioinformatics
IgFold: How deep learning on 0.5 billion natural antibody sequences and graph networks can facilitate fast antibodies structure prediction
June 23, 2024
Protein Design
Structure Prediction
Generative Design
Umol: Predicting structures of protein-ligand complexes from sequence using a co-folding strategy
June 20, 2024
Virtual Screening
Docking
ML/AI
Drug Discovery
MolX: Towards a 3rd Generation 3D Biomolecule Visualization Platform
June 17, 2024
Protein Design
Virtual Screening
Chemistry
Docking
Structure Prediction
News
Generative Design
Molecular Dynamics
Drug Discovery
Biologics
Bioinformatics
AlphaFind: Machine Learning and Clustering Enable Fast 3D Structure Similarity Search
June 17, 2024
Protein Design
Structure Prediction
Generative Design
Bioinformatics
FABind+: How Enhanced Pocket Prediction and Pose Generation Can Transform Your Molecular Docking
June 13, 2024
Virtual Screening
Docking
ML/AI
Drug Discovery
How to enable drug discovery operations using auto-scaling multi-service cloud infrastructure on AWS
June 10, 2024
Virtual Screening
Structure Prediction
Drug Discovery
Bioinformatics
Cloud Computing
AF-Cluster: How to predict protein structural conformations using sequence similarity clustering?
June 8, 2024
Protein Design
ML/AI
Molecular Dynamics
AFsample2: Sampling the Diverse Conformational Landscape of Proteins By Generative Models
June 8, 2024
Structure Prediction
ML/AI
Generative Design
Molecular Dynamics
AF2BIND: Automatic ligand binding site prediction using deep neural network
June 8, 2024
Virtual Screening
Chemistry
Docking
Drug Discovery
ABodyBuilder3: Language model embeddings enable scalable and precise antibody structure prediction
June 6, 2024
Protein Design
Structure Prediction
Drug Discovery
Biologics
ProSTAGE: How Can Graph Convolutional Networks Reveal the Effect of Mutations on Protein Stability
June 4, 2024
Chemistry
Structure Prediction
ML/AI
Biologics
H3-OPT: Overcoming Antibody CDR-H3 Structure Prediction Challenges with Deep Learning
June 2, 2024
Protein Design
Structure Prediction
ML/AI
Generative Design
Drug Discovery
Biologics
Machine Learning Designs Potent Dual Peptide Agonists of GCGR and GLP-1R: Are Fourth Generation Weight Loss Drugs Around the Corner?
June 1, 2024
ML/AI
Drug Discovery
Pharmaceuticals
Bioinformatics
CarbonDesign: Inverting AlphaFold2 for the Inverse Folding Problem
June 1, 2024
Protein Design
Structure Prediction
Generative Design
Bioinformatics
Genie2: Diffusion Model for Complex and Multifunctional Protein Design
May 31, 2024
Protein Design
ML/AI
Generative Design
Evaluating Docking: Why RMSD Isn't Enough According to PoseBusters
May 30, 2024
Virtual Screening
Chemistry
Docking
ML/AI
Why is RoseTTAFold All-Atom a game changer?
May 29, 2024
Docking
Structure Prediction
Drug Discovery
RaSP: Accurate and fast protein stability prediction
May 28, 2024
Protein Design
Drug Discovery
Bioinformatics
AfCycDesign: Designing cyclic peptides with atomic level accuracy
May 27, 2024
Protein Design
Generative Design
Drug Discovery
Biologics
FAbCon: Can antibody-specific generative foundation model facilitate antibody sequence understanding?
May 27, 2024
Protein Design
Generative Design
Drug Development
Biologics
Macformer: How Deep Learning Can Potentially Help the Design of Macrocyclic Drug Candidates
May 26, 2024
Chemistry
Generative Design
Drug Discovery
CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides
May 25, 2024
Drug Discovery
Biologics
Bioinformatics
DDMut-PPI: Can Deep Learning Predict the Effects of Mutations on PPI?
May 24, 2024
Docking
Structure Prediction
ML/AI
Bioinformatics
AntiFold: Superior Structure-Based Antibody Sequence Design for Enhanced CDR Recovery
May 19, 2024
ML/AI
Drug Development
Biologics
AI Methods in Antibody Structure Prediction and De Novo Generation
May 17, 2024
Protein Design
Generative Design
Biologics
AlphaFold 3 vs AlphaFold 2/Multimer: A Summary
May 15, 2024
Structure Prediction
ML/AI
Drug Discovery
POLYGON: Generative reinforcement learning model generates compounds that target multiple proteins
May 12, 2024
Chemistry
Generative Design
Beyond RMSD: What Are the 8 Chemical and Physical Criteria Needed to Evaluate Ligand Docking Methods?
May 8, 2024
Virtual Screening
Chemistry
Docking
ML/AI
A Round Trip Through Noise: Diffusion Models Fueling Generative Protein Design
May 7, 2024
Protein Design
Virtual Screening
Docking
Structure Prediction
What’s so special about DiffDock?
May 1, 2024
Virtual Screening
Docking
ML/AI
Bioinformatics
